LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
XLOC_013272
hsa-miR-190b
1.000
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027233
Biotype: transcript isomorph
Gene id: XLOC_013272
Gene Name: XLOC_013272
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-310
0.125
0
8mer
355-361
0.096
0
8mer
566-584
0.087
0
6mer
855-879
0.009
0
8mer
1304-1331
0.007
Not Conserved
7mer
1803-1826
0.005
Not Conserved
RP11-333E1.2
hsa-miR-190b
1.000
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575056
Biotype: lincRNA
Gene id: ENSG00000263164
Gene Name: RP11-333E1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
208-224
0.131
0
9mer
249-260
0.126
0
9mer
3-19
0.018
Not Conserved
9mer
44-55
0.014
Not Conserved
6mer
290-301
0.012
0
XLOC_011696
hsa-miR-190b
1.000
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024372
Biotype: transcript isomorph
Gene id: XLOC_011696
Gene Name: XLOC_011696
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2235-2256
0.078
0
7mer
2202-2222
0.065
0
7mer
11-28
0.064
0
6mer
461-483
0.014
0
6mer
384-403
0.014
0
7mer
1415-1430
0.012
Not Conserved
7mer
1528-1549
0.010
Not Conserved
XLOC_013278
hsa-miR-190b
1.000
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027248
Biotype: transcript isomorph
Gene id: XLOC_013278
Gene Name: XLOC_013278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-468
0.137
0
8mer
1068-1082
0.117
0
LINC01224
hsa-miR-190b
1.000
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596283
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2484-2509
0.107
1
8mer
1415-1439
0.024
1
7mer
1745-1771
0.021
1
7mer
928-944
0.021
1
8mer
1218-1244
0.015
0
7mer
307-331
0.013
0
8mer
1144-1156
0.010
0
7mer
1598-1622
0.005
0
chr22-38_28785274-29006793.1
hsa-miR-190b
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
137844-137865
0.014
Not Conserved
7mer
266903-266915
0.013
0
9mer
258294-258320
0.013
1
9mer
108905-108918
0.010
1
8mer
17227-17247
0.009
1
8mer
80914-80922
0.008
3
9mer
137855-137874
0.007
0
8mer
136082-136099
0.005
3
7mer
135736-135755
0.004
4
7mer
49891-49913
0.004
0
7mer
87416-87436
0.004
1
7mer
167206-167232
0.004
1
7mer
105959-105984
0.004
Not Conserved
7mer
151720-151740
0.004
3
8mer
248386-248407
0.004
0
8mer
178325-178346
0.004
1
8mer+wobble
251982-251999
0.004
1
7mer
250533-250549
0.003
0
6mer
173038-173054
0.003
7
7mer
256226-256236
0.003
0
7mer
180551-180567
0.002
0
7mer
155910-155935
0.002
1
7mer
117012-117026
0.002
0
6mer
230994-231001
0.002
0
6mer
233960-233975
0.002
0
6mer
186591-186605
0.002
1
6mer
129580-129604
0.002
2
6mer
42648-42667
0.002
2
6mer
217188-217213
0.002
0
6mer
20445-20459
0.002
2
6mer
24401-24424
0.002
0
6mer
129366-129386
0.002
1
6mer
72904-72924
0.002
1
6mer
55138-55148
0.002
0
7mer
209697-209712
0.002
Not Conserved
6mer
139655-139666
0.002
0
6mer
112003-112025
0.002
0
6mer
97887-97897
0.002
0
6mer
63838-63863
0.002
1
6mer
16763-16778
0.002
1
6mer
83544-83555
0.001
1
6mer
71625-71642
0.001
1
6mer
212539-212562
0.001
1
6mer
146762-146779
0.001
0
6mer
183044-183061
0.001
0
6mer
89620-89632
0.001
1
6mer
48692-48708
0.001
1
6mer
155579-155603
0.001
1
6mer
233629-233653
0.001
1
6mer
104154-104174
0.001
0
6mer
23904-23926
0.001
1
6mer
156105-156132
0.001
1
6mer
178992-179006
0.001
0
6mer
192229-192249
0.001
1
6mer
158336-158363
0.001
1
6mer
193653-193680
0.001
Not Conserved
6mer
4666-4691
0.001
0
6mer
48108-48122
0.001
0
6mer
54733-54749
0.001
1
6mer
221965-221979
0.001
1
6mer
250548-250571
0.001
0
6mer
236925-236937
0.001
Not Conserved
LINC00664
hsa-miR-190b
1.000
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596203
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-105
0.140
1
7mer
374-396
0.015
0
7mer
587-602
0.011
0
XLOC_013274
hsa-miR-190b
1.000
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4778-4804
0.049
1
8mer
5131-5157
0.044
1
8mer
5493-5518
0.039
1
7mer
3414-3436
0.016
1
6mer
2063-2073
0.008
1
7mer
5718-5743
0.004
Not Conserved
TTTY10
hsa-miR-190b
1.000
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000455084
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1204-1228
0.160
0
LINC01005
hsa-miR-190b
1.000
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451440
Biotype: antisense
Gene id: ENSG00000228564
Gene Name: LINC01005
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2-27
0.152
1
LOC283070
hsa-miR-190b
1.000
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_027322.1
Biotype: sense
Gene id: NR_027322.1 (gene)
Gene Name: LOC283070
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2315-2339
0.137
9
6mer
1433-1457
0.003
2
XLOC_013265
hsa-miR-190b
0.999
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027227
Biotype: transcript isomorph
Gene id: XLOC_013265
Gene Name: XLOC_013265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1125-1143
0.135
0
XLOC_006128
hsa-miR-190b
0.999
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013480
Biotype: transcript isomorph
Gene id: XLOC_006128
Gene Name: XLOC_006128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-91
0.038
1
8mer
1088-1107
0.037
0
9mer
1007-1032
0.024
Not Conserved
8mer
403-415
0.023
0
7mer
636-659
0.011
0
LINC00293
hsa-miR-190b
0.999
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518962
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
678-700
0.133
1
RP11-15H20.6
hsa-miR-190b
0.999
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601239
Biotype: retained_intron
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2278-2304
0.107
1
7mer
914-936
0.025
1
AC003973.4
hsa-miR-190b
0.999
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596778
Biotype: lincRNA
Gene id: ENSG00000269504
Gene Name: AC003973.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
827-845
0.085
0
7mer
1227-1249
0.035
0
8mer
907-934
0.006
Not Conserved
LINC00293
hsa-miR-190b
0.999
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027013.1
Biotype: lincRNA
Gene id: NR_027013.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1363-1385
0.125
1
CTD-2291D10.3
hsa-miR-190b
0.999
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600896
Biotype: lincRNA
Gene id: ENSG00000269543
Gene Name: CTD-2291D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-137
0.123
0
LINC00293
hsa-miR-190b
0.999
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521715
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1374-1396
0.120
1
XLOC_013007
hsa-miR-190b
0.999
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026949
Biotype: transcript isomorph
Gene id: XLOC_013007
Gene Name: XLOC_013007
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-66
0.119
0
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